S.O. Garbuzynskiy : rechercher sur Z-Library

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1

Solution of Levinthal’s paradox is possible at the level of the formation and assembly of protein secondary structures

Finkelstein, A. V., Garbuzynskiy, S. O.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 542 KB

english, 2016

2

Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

Mikhail M. Savitski, Frank Kjeldsen, Michael L. Nielsen, Sergiy O. Garbuzynskiy, Oxana V. Galzitskaya, Alexey K. Surin, Roman A. Zubarev

Journal:

Angewandte Chemie

Année:

2007

Langue:

english

Fichier:

PDF, 101 KB

english, 2007

3

Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

Mikhail M. Savitski, Frank Kjeldsen, Michael L. Nielsen, Sergiy O. Garbuzynskiy, Oxana V. Galzitskaya, Alexey K. Surin, Roman A. Zubarev

Journal:

Angewandte Chemie International Edition

Année:

2007

Langue:

english

Fichier:

PDF, 102 KB

english, 2007

4

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Dmitry N. Ivankov, Alexei V. Finkelstein

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2003

Langue:

english

Fichier:

PDF, 98 KB

english, 2003

5

Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray- and NMR-resolved protein structures?

Sergiy O. Garbuzynskiy, Bogdan S. Melnik, Michail Yu. Lobanov, Alexei V. Finkelstein, Oxana V. Galzitskaya

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 393 KB

english, 2005

6

Entropy capacity determines protein folding

Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 732 KB

english, 2006

7

More compact protein globules exhibit slower folding rates

Oxana V. Galzitskaya, Danielle C. Reifsnyder, Natalya S. Bogatyreva, Dmitry N. Ivankov, Sergiy O. Garbuzynskiy

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 221 KB

english, 2008

8

The difference between protein structures obtained by x-ray analysis and nuclear magnetic resonance

B. S. Melnik, S. O. Garbuzynskiy, M. Yu. Lobanov, O. V. Galzitskaya

Journal:

Molecular Biology

Année:

2005

Langue:

english

Fichier:

PDF, 150 KB

english, 2005

9

On the Prediction of Folding Nuclei in Globular Proteins

S. O. Garbuzynskiy, A. V. Finkelstein, O. V. Galzitskaya

Journal:

Molecular Biology

Année:

2005

Langue:

english

Fichier:

PDF, 117 KB

english, 2005

10

Prediction of amino acid residues protected from hydrogen-deuterium exchange in a protein chain

N. V. Dovidchenko, M. Yu. Lobanov, S. O. Garbuzynskiy, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Année:

2009

Langue:

english

Fichier:

PDF, 212 KB

english, 2009

11

Statistical analysis of unstructured amino acid residues in protein structures

M. Yu. Lobanov, S. O. Garbuzynskiy, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Année:

2010

Langue:

english

Fichier:

PDF, 251 KB

english, 2010

12

Prediction of protein domain boundaries from statistics of appearance of amino acid residues

O. V. Galzitskaya, N. V. Dovidchenko, M. Yu. Lobanov, S. O. Garbuzynskiy

Journal:

Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 217 KB

english, 2006

13

Prediction of natively unfolded regions in protein chains

O. V. Galzitskaya, S. O. Garbuzynskiy, M. Yu. Lobanov

Journal:

Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 147 KB

english, 2006

14

A search for amyloidogenic regions in protein chains

O. V. Galzitskaya, S. O. Garbuzynskiy, M. Yu. Lobanov

Journal:

Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 165 KB

english, 2006

15

To be folded or to be unfolded?

Sergiy O. Garbuzynskiy, Michail Yu. Lobanov, Oxana V. Galzitskaya

Journal:

Protein Science

Année:

2004

Langue:

english

Fichier:

PDF, 254 KB

english, 2004

16

Structural features of protein folding nuclei

S.O. Garbuzynskiy, M.S. Kondratova

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 105 KB

english, 2008

17

Outlining Folding Nuclei in Globular Proteins

Sergiy O. Garbuzynskiy, Alexei V. Finkelstein, Oxana V. Galzitskaya

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2004

18

Levinthal’s question answered … again?

Finkelstein, Alexei V., Garbuzynskiy, Sergiy O.

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2013

Langue:

english

Fichier:

PDF, 93 KB

english, 2013

19

Contact order revisited: Influence of protein size on the folding rate

Dmitry N. Ivankov, Sergiy O. Garbuzynskiy, Eric Alm, Kevin W. Plaxco, David Baker, Alexei V. Finkelstein

Journal:

Protein Science

Année:

2003

Langue:

english

Fichier:

PDF, 149 KB

english, 2003

20

Restrictions to protein folding determined by the protein size

Finkelstein, Alexei V., Bogatyreva, Natalya S., Garbuzynskiy, Sergiy O.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2013

21

FoldUnfold: web server for the prediction of disordered regions in protein chain

Galzitskaya, O. V., Garbuzynskiy, S. O., Lobanov, M. Yu.

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 84 KB

english, 2006

22

FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence

Garbuzynskiy, S. O., Lobanov, M. Yu., Galzitskaya, O. V.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 469 KB

english, 2010

23

Golden triangle for folding rates of globular proteins

Garbuzynskiy, S. O., Ivankov, D. N., Bogatyreva, N. S., Finkelstein, A. V.

Journal:

Proceedings of the National Academy of Sciences

Année:

2013

Langue:

english

Fichier:

PDF, 542 KB

english, 2013

24

IS IT POSSIBLE TO PREDICT AMYLOIDOGENIC REGIONS FROM SEQUENCE ALONE?

GALZITSKAYA, OXANA V., GARBUZYNSKIY, SERGIY O., YU. LOBANOV, MICHAIL

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2006

Langue:

english

Fichier:

PDF, 366 KB

english, 2006

25

Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms

Glyakina, A. V., Garbuzynskiy, S. O., Lobanov, M. Yu., Galzitskaya, O. V.

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 173 KB

english, 2007

26

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder

Lobanov, M. Yu., Shoemaker, B. A., Garbuzynskiy, S. O., Fong, J. H., Panchenko, A. R., Galzitskaya, O. V.

Journal:

Nucleic Acids Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.72 MB

english, 2010

27

Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis

Fong, Jessica H., Shoemaker, Benjamin A., Garbuzynskiy, Sergiy O., Lobanov, Michail Y., Galzitskaya, Oxana V., Panchenko, Anna R., Dunker, Keith

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2009

28

Understanding the Folding Rates and Folding Nuclei of Globular Proteins

Finkelstein, Alexei, Ivankov, Dmitry, Garbuzynskiy, Sergiy, Galzitskaya, Oxana

Journal:

Current Protein & Peptide Science

Année:

2007

Langue:

english

Fichier:

PDF, 741 KB

english, 2007

29

Prediction of Amyloidogenic and Disordered Regions in Protein Chains

Galzitskaya, Oxana V., Garbuzynskiy, Sergiy O., Lobanov, Michail Yurievich

Journal:

PLoS Computational Biology

Année:

2006

Langue:

english

Fichier:

PDF, 344 KB

english, 2006

30

Theoretical study of protein folding: outlining folding nuclei and estimation of protein folding rates

O. V. Galzitskaya, S. O. Garbuzynskiy, A. V. Finkelstein

Année:

2005

Langue:

english

Fichier:

PDF, 543 KB

english, 2005

31

Expected packing density allows prediction of both amyloidogenic and disordered regions in protein chains

Galzitskaya, Oxana V, Garbuzynskiy, Sergiy O, Lobanov, Michail Yu

Journal:

Journal of Physics Condensed Matter

Année:

2007

Langue:

english

Fichier:

PDF, 596 KB

english, 2007

32

Calculation of mobility and entropy of the binding of molecules by crystals

Garbuzynskiy, S. O., Finkelstein, A. V.

Journal:

Molecular Biology

Année:

2016

Langue:

english

Fichier:

PDF, 525 KB

english, 2016

33

Reduction of the Search Space for the Folding of Proteins at the Level of Formation and Assembly of Secondary Structures: A New View on the Solution of Levinthal′s Paradox

Finkelstein, Alexei V., Garbuzynskiy, Sergiy O.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 949 KB

english, 2015

34

There and back again: Two views on the protein folding puzzle

Finkelstein, Alexei V., Badretdin, Azat J., Galzitskaya, Oxana V., Ivankov, Dmitry N., Bogatyreva, Natalya S., Garbuzynskiy, Sergiy O.

Journal:

Physics of Life Reviews

Année:

2017

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2017

35

Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals

Garbuzynskiy, Sergiy O., Finkelstein, Alexei V.

Journal:

The Journal of Physical Chemistry Letters

Année:

2017

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2017

36

Evaluation of the Accuracy of Calculation of the Standard Binding Entropy of Molecules from their Average Mobility in Molecular Crystals

Garbuzynskiy, S. O., Finkelstein, A. V.

Journal:

Molecular Biology

Année:

2018

Langue:

english

Fichier:

PDF, 750 KB

english, 2018

37

Correction to “Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals”

Garbuzynskiy, Sergiy O., Finkelstein, Alexei V.

Journal:

The Journal of Physical Chemistry Letters

Année:

2018

Langue:

english

Fichier:

PDF, 366 KB

english, 2018